Re: [PyMOL] Missing parts in cartoon mode

Well ill be d..! The .pse file you send me shows the loops just fine. I´m still puzzled as to why PyMol 0.98 on win2000 fails to show those loops but now I can just use your .pse file as a template and work my way around it. Ill also try upgrading as Warren suggest. Anyways, thanks a lot for th

Re: [PyMOL] Need testers for new MacPyMOL on Tiger

On Oct 14, 2005, at 17:50, Warren DeLano wrote: For cutting-edge Mac users, there is a new MacPyMOL for Tiger that integrates into a single window and links to the system Python instead of bringing its own copy (in part this is necessary preparation for Intel...). http://delsci.com/beta Pleas

[PyMOL] Mac Stereo 3D: Breaking News

See "New Power Macs" on http://www.macworld.com/news/2005/10/19/liveupdate/index.php The first Quad-core Mac and the the first with a Quadro FX 4500 graphics card! Do you know what this implies? Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scient

[PyMOL] PyMOL featured on Apple Store site?

So, that sure looks like PyMOL to me (actually, four instances of it) running on the display of a PowerMac G5 on the newly-updated Apple Store website today. My question is, which structure is that? -- D. Joe Anderson, Asst. Sci.2252 Molecular Biology Bldg Biochem, Biophys, & Mol Bio I

Re: [PyMOL] PyMOL featured on Apple Store site?

Do you have the URL? D. Joe Anderson wrote: > So, that sure looks like PyMOL to me (actually, four instances > of it) running on the display of a PowerMac G5 on the > newly-updated Apple Store website today. > > My question is, which structure is that? >

Re: [PyMOL] PyMOL featured on Apple Store site?

nm, I found the url: http://store.apple.com/1-800-MY-APPLE/WebObjects/AppleStore.woa/72303/wo/iG1ZdpmENibK2kKdLwyNuAAR9NW/0.SLID?nclm=PowerMac&mco=586014F6 D. Joe Anderson wrote: > So, that sure looks like PyMOL to me (actually, four instances > of it) running on the display of a PowerMac G5 on t

RE: [PyMOL] PyMOL featured on Apple Store site?

They've got MacPyMOL two places on this site: http://www.apple.com/powermac/graphics.html Be sure to note the explicit mention of stereo 3D "in a window" down near the bottom. Amazing! The "Stereo 3D Matters to Me" campaign actually worked. Apple really *is* serious about meeting our needs

Re: [PyMOL] PyMOL featured on Apple Store site?

On Wed, 19 Oct 2005, Sabuj Pattanayek wrote: nm, I found the url: http://store.apple.com/1-800-MY-APPLE/WebObjects/AppleStore.woa/72303/wo/iG1ZdpmENibK2kKdLwyNuAAR9NW/0.SLID?nclm=PowerMac&mco=586014F6 That URL complains that the session has expired. - go to www.apple.com - click on the Sto

[PyMOL] CRT vs flat panel stereo on Mac question

Warren Exciting news. Any thoughts on whether it will be possible to run stereo on a flat panel? At minimum seems like we can retire SGIs and use the CRT monitors? Also, quad processors are nice, but for those of us with recent G5s is all we need the new graphics card? -- Mark Mayer Ph.D.

[PyMOL] edgelines between molecules

Hello All, I have a large mega-dalton multi chain structure that I would like to make an overview (surface) figure. Instead of using many colors (13subunits) I would like to use one color and demarcate the subunits by some other means.One way would be to generate some sort of edge lines between th

[PyMOL] Stereo 3D Monitors & Equipment

Here is some current information for those of you ordering yourself a new "Quad" Quadro-based Mac for doing Stereo 3D visualization. You will also need a good CRT, a stereo signal emitter, and shutter glasses. Stereo 3D glasses & emitters: - More expensive: StereoGraphics

[PyMOL] Stereo

Not sure I understand Warren's post: Also, quad processors are nice, but for those of us with recent G5s is all we need the new graphics card? I hope -- that along with an OS / OpenGL driver upgrade... Does this mean that until Apple release an OS / OpenGL driver upgrade, stereo is still n

RE: [PyMOL] Stereo

> Does this mean that until Apple release an OS / OpenGL driver > upgrade, stereo is still not possible on OS X even with new hardware? Not at all. Currently shipping hardware http://www.apple.com/powermac does stereo 3D in a window with currently shipping software http://www.delsci.com/macpymol

[PyMOL] Query variable value

PyExperts: When inside PyMOL, how do I find out the value of a variable without using 'set'? For example, I can type: set specular, 1 and then I know, specular = 1. But how do I find out specular's (or ANY variable's) value without changing it? Thanks, Olivier -- Olivier Julien PhD prov

RE: [PyMOL] edgelines between molecules

Balaji: I've done this by making a surface of just the domain I want to highlight, then bring it into Photoshop. Select the background, then invert the selection. Then convert selection to path and then stroke the path. Here is an example: [ Attachment only sent to Balaji, available on

[PyMOL] Re: PyMOL-users digest, Vol 1 #1032 - 3 msgs

Oliver, I know it'll sound crazy but -- "get". :-) For example, get two_sided_lighting or get bg_rgb I think this is covered on the Wiki somewhere, too. (http://www.pymolwiki.org/) HTH, -- Jason On Wed, 2005-10-19 at 20:24 -0700, pymol-users-requ...@lists.sourceforge.net wrote: > Message:

Re: [PyMOL] Query variable value

PyExperts: When inside PyMOL, how do I find out the value of a variable without using 'set'? For example, I can type: set specular, 1 and then I know, specular = 1. But how do I find out specular's (or ANY variable's) value without changing it? Thanks, Olivier Hello Olivier, For PyMOL