MacPyMOL Users,
If you've recently bought a Stereo 3D-equipped G5 Single/Dual/Quad for
running MacPyMOL and other scientific codes, please let me know -- I'd
like some candid real-world feedback on how well these systems are
performing...
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
| This isn't really something PyMOL was designed to do. You could construct
| such a surface using Python CGO facility, but that means doing the
| tesselation, surface normal calculation, and any culling yourself.
Thanks. Is this what you do already in pymol to make surfaces that envelop
points?
I've been using PyQt/Coin/SoQt/pivy to draw surfaces using SoNurbsSurface.
I'm wondering if something like this is possible in pymol?
I.e., I specify a set of points in 3D space and use pymol to lay an
interpolated surface over them. I don't want the surface to fully envelop
the points in the way
Here's another question about ray. At what level in pymol is it
implemented? Is it part of what's provided by OpenGL, or done at some
higher/other level?
Terry
David,
In recent builds, you don't need to specify both dimensions for the ray
command -- just give it height or width and it will compute the other
based on the current aspect ratio.
Regardless, to get the current window, here is one way:
print cmd.get_session()['main']
Cheers,
Warren
--
Warr
Hi,
On the subject of larger image sizes, I had a question a while back; I'd
like to know if it's been addressed or anyone has a quick(er)
workaround-
Basically, is there in inverse to the viewport command? i.e., if I
manually resize the Pymol window to fit around the molecule I'm
displaying, how
If you would like appropriately scaled images then you can set up your
viewer to the appropriate dimensions eg for a square
viewport 700,700
or rectangle
viewport 800,400
If using a square I then use
ray 1800,1800
this ray traces an image larger than your pymol window and allows you to
sav
Dear People,
I was wondering if if people could recommend
1) a way of generating all bond lengths and bond angles for a molecule
automatically(atm I'm using the measurement wizard)
2) a method for increasing the size of the font produced by the
measurement wizard
If I have missed