[PyMOL] movie in pymol

Dear all, I am trying to make a movie in pymol with two structure of the same protein.one is crystal structure and one is NMR structure.The N-terminal part of crystal structure is in open conformation whereas that of NMR is closed.What command should I use.Is it possible to make the movie with

Re: [PyMOL] error on debian w/ pymol -c foo.pml

Hi Xavier, we also stumbled over this error and resolved it in a similar fasion. Also we have sent a bug report to debian: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=409188 The problem is that "$*" sends all command line arguments as a single combined string to pymol's __init__.py. The bug

Re: [PyMOL] movie in pymol

Shivesh, Given that this is your third post on the same topic, an important point needs to be made: It is not reasonable for one user to expect other PyMOL mailing list participants to teach them how to use the software, especially for involved tasks such as movie-making. Open source is largel

[PyMOL] trouble selecting residues with mouse

I have been trying to run the latest version of MacPyMOL on my new iMac with an Intel Core 2 Duo processor and the latest version of OSX. I have noticed problems trying to select residues with my mouse (either control-clicking to select or double clicking to get the menu). I can select so

Re: [PyMOL] function keys

> Sorry for emailing you direct but I am having "issues" with > posting to the bulletin board. I think it is our end. You're not the only one -- overzealous anti-spam measures at SourceForge are causing problems for legitimate users. > Anyway I was wondering if there was a function key > (keyst

[PyMOL] caver plugin

Hi Has anyone successfully used Caver plugin using gromac trajectory files? Any suggestion is appreciated. Thanks Murali -- Dr. Ramachandran Murali Associate Professor 243 John Morgan Building Department of Pathology & Lab. Medicine University of Pennsylvania Philadelphia, PA-19104-6082

[PyMOL] Using server CPU instead of client GPU?

Dear PyMOL users, We are using an old SGI (O2) classroom for teaching in a client/server setup in which compute-intensive modeling programs run on a few fast servers but display on slow SGI terminals. This works fine with some applications but PyMOL obviously recognizes SGI OpenGL setup and will

[PyMOL] caver plugin

Hi Has anyone successfully used Caver plugin using gromacs trajectory files? Any suggestion is appreciated. Thanks Murali -- Dr. Ramachandran Murali Associate Professor 243 John Morgan Building Department of Pathology & Lab. Medicine University of Pennsylvania Philadelphia, PA-19104-6082

Re: [PyMOL] Using server CPU instead of client GPU?

Kalju, 1. Old SGIs have pitiful graphics performance when compared to modern PC graphics cards. You would likely get better results running PyMOL locally on a PC desktop or laptop than on an old SGI workstation. 2. Surfaces are calculated server-side, however, PyMOL was not optimized for client/