Hello,
I've been using pymol for quite some time now but the contour level is still
a mystery to me. Why is there a difference bewteen contour levels of FFT
electron density maps displayed in Xfit vs pymol? When using the command
for example :isomesh mesh1, fo-fc, 1.0, etc..., in pymol what doe
Hi Rafael,
There is a lot of info on the wiki:
http://www.pymolwiki.org
also, there is a help system in pymol (type "help"). The run command
is what you want for running scripts.
gilleain torrance
On 2/27/07, Rafael Fernández Leiro wrote:
Hello, firstly excuse my english. I'll try to get
Hello,
Has anyone explored the idea of other types of clipping shapes? The current
clipping planes are parallel to the display. What about an octant type
clipping? Or perhaps a clipping box?
--Kevin
--
Kevin Neff
Mayo College of Medicine
Registered Linux User #432952
Hi there...
If you want to generate your morph-pdbs with sensible geometry, try this
script:
http://www.molmovdb.org/molmovdb/morph/download/morph_dist.inp
It requires CNS, but if you have start and end, it interpolates smoothly,
using all atoms, without distorting geometry of side chains and so
Hi Clara
Try
set ribbon_trace_atoms, 1
or
set cartoon_trace_atoms, 1
Daniel
On Wed, 2007-02-28 at 10:10 +0100, Clara Marco wrote:
> Hi!
> I'm trying to build a morphing movie to show the transition between
> two conformational states of a protein. I've run morphing with
> program LSQMAN, wh
Hi!
I'm trying to build a morphing movie to show the transition between
two conformational states of a protein. I've run morphing with
program LSQMAN, which has generated intermediate pdb files between
start.pdb and end.pdb.The problem is that to avoid geometry
distortions I've used a LSQMAN option
