Hi Moshe,
No it isn't. PyMOL is a molecular viewer/graphics engine, not a
modeling package. However, it's not too hard to do using your
favourite MD package. With the definition of a bond and some energy
minimization you'd get close. If it's for displaying purposes only,
that might even be enough.
Hello.
I am new to PyMOL.
Very easily I succeeded to build a linear peptide, given its sequence.
I want to build a cyclic peptide for the same sequence, connecting the
C-terminus with the N-terminus. I know that the bond that is created
that way is too long - it should be, also, some
(auto
