hello pymol users
Myself sangita i have a protein MspI(MspI monomer bounded with double stranded
DNA),i want to make dimer of it bounded with single double stranded cognate DNA
sequence.Is it possible to make this using pymol
With regards
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
Hi everyone,
I am trying to find a way, in Pymol, to remove an amino acid from a peptide
and insert any other amino acid. I have been able to do this for one residue
at a time using the command
editor.attach_fragment(‘pk1′,’my_fragment_name’,11,0)
but I have to do this in two parts so that the
I think what you're asking for is one of the examples included in the
PyMol source code. You can do this manually using the mutagenesis
wizard, but it is possible to drive this wizard through scripts. The
two examples can be found at:
Hi,
I'm using cgos of fairly large triangulated surfaces from other programs
and was wondering if anyone had guidance regarding the following:
- the cgo encoding of individual triangles is somewhat bulky and makes
for huge files which are slow for pymol to load. Is there an
alternative, more
Hi Alastair,
The CGO file should come out something like:
cgo_obj = [
BEGIN, TRIANGLES, ALPHA, 1.0,
COLOR, 1.0, 1.0, 1.0,
NORMAL, -1.70693, -11.93375, 23.78227,
VERTEX, 39.96822, 39.96822, -36.33474,
VERTEX, 34.37814, 37.81595, -37.81595,
VERTEX, 38.78347,
Hi everyone,
I am trying to find a way, in Pymol, to remove an amino acid from a peptide
and insert any other amino acid. I have been able to do this for one residue
at a time using the command
editor.attach_fragment(‘pk1′,’my_fragment_name’,11,0)
but I have to do this in two parts so that the
Hi Alastair,
50-100k triangles comes down to 600-1200k floats that have to be
stored in memory. That's heavy stuff! Of course there's quite a bit of
redundancy, since many points arepart of several triangles, but I
don't think that this is considered for CGO.
There is a way though to get the
After playing around for several days, I have a related question about settings
and selections.
I have a surface representation of a protein: whole structure in scene 1 and a
zoomed segment in scene 2. I would like to decrease the quality for the first
scene, but boost it up for the second
