hi,
thanks for the answers jason and michael.
> set valence
is what i was actually looking for. as i forgot to attach my
example last time, my second question wasn't quite clear i
guess: the filename which i used to load my molecules (all
included in one mol2 file) is not the one of the dif
Hello all
I have to cut phosphodiester bond.Is it possible to cut it using pymol?
If possible can anybody explain it.
With regard
Sangita Kachhap
JRF
BIC,IMTECH
CHANDIGARH
--
ThinkGeek and WIRED's GeekDad team up for
Activate the Edit mode, then Ctrl+right-click on the bond, and after
that Delete button.
Hugo
Sangita Kachhap wrote:
> Hello all
>
> I have to cut phosphodiester bond.Is it possible to cut it using pymol?
> If possible can anybody explain it.
>
>
> With regard
>
> Sangita Kachhap
> JRF
> BIC,IMTEC
Dear All,
Is there any way of color coding sequence conservation of a protein onto
structure by using multiple sequence alignment and structure in pymol ?
Thanks in advance
--
Best Regards,
Humayun Sharif
MS student
Protein Structure and Function Laboratory
Gwangju Institute Of Science & Tec
Dear Humayun,
On 4 June 2010 13:30, humayun scherrif wrote:
> Dear All,
> Is there any way of color coding sequence conservation of a protein onto
> structure by using multiple sequence alignment and structure in pymol ?
>
It might be possible to do this in PyMOL, but I would strongly advise
yo
Indeed, both of them (ConSurf, ALINE) worked very well. Although I found
ConSurf to be exact what I asked for, but I was also looking for program
like ALINE which aligns the sequences with secondary structure labelling.
Thanks a lot
On Fri, Jun 4, 2010 at 8:47 PM, Folmer Fredslund wrote:
> De
Sebastian,
Here's some help on labeling:
# label all atoms with the object name (file name minus extension)
label *, model
# label by residue name
label *, resn
Your command,
label C10, resn
was a good guess, but that asks PyMOL to "label the atoms in the
object called 'C10' by their residue
