Hi PyMOLers,
I have been tackling this problem (on and off) for quite some time now but
without any luck. I have been trying to create CGO triangles using the
following simple sample script:
###
from pymol.cgo import *
from math import *
from pymol import
Hi Sean,
On Fri, 09 Jul 2010 11:05:09 -0400 Sean Law magic...@hotmail.com wrote:
I have been tackling this problem (on and off) for quite some time now but
without any luck. I have been trying to create CGO triangles using the
following simple sample script:
Hello,
I am trying to run a simple python script from Pymol and cannot run it:
***
# axes.py
from pymol.cgo import *
from pymol import cmd
from pymol.vfont import plain
# create the axes object, draw axes with cylinders coloured red, green,
#blue for X, Y and Z
obj =
Hi gang,
Just wanted to share some notes on compiling and getting Pymol 1.3.x running
on OS X Snow Leopard. Before proceeding, you'll of course need the XCode SDK
which comes supplied with the OS X cd's or downloaded through apple's
developer site.
(1) Compilation:
For some reason, the
Hi,
Your assumptions are correct, as I've copied and tested your code, which
works fine from the current working directory where I ran the pymol start
script. It's probably a quirk w/ your installation? Otherwise, you can just
specify the full path to your script or cd into the folder... either
Hello,
I downloaded a pymol script from
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ called
draw_cell.py. I have Python 2.6.5, numpy version: 1.3.0, I
downloaded cctbx for unix (self extracting files) and installed cctbx
in my $HOME/bin/. I have also included the line (.
Thanks for your mail. I did two things:
(i) typed the entire path starting from /home/../../draw_cell.py
(ii)cd /home/../../ and then run draw_cell.py.
It still gives me the same error of not finding cctbx. I checked if I
am in the correct directory by typing pwd and got the correct
answer. When
Did you try the macports (http://www.macports.org/) version?
Marius
On Fri, Jul 9, 2010 at 10:10 PM, Paul Rigor (uci) paul.ri...@uci.eduwrote:
Hi gang,
Actually, I spoke too soon! I attempted this compilation to address another
user's problems with an external script. But as you can see from
Hi Marius,
So I grabbed Pymol through macports, but now the main control window isn't
being rendered. I also receive the following error message. I've truncated
the error message. I know that macports resolved the tk/tcl dependencies,
so I'm not sure what's up? Has anyone else run into this
This usually means that tk or tcl is not installed correctly.
You could try to google the error. This gives you an idea about the problem
99% of the cases. Also you can double check that everything is installed. $
port installed tk tcl pymol. On a macosx 10.5.8 I get:
pymol @1.3_0 (active)
tcl
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