[PyMOL] stick coloring on Intel graphics card

Dear all, I have the same problem like here: http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg08034.html If I try to draw the sticks by elements the coloring is not done by elements. Instead the structure is colored by clusters. The coloring is normal if I draw lines. I

[PyMOL] print out distance

Hello, I used a simple script to calculate the distance between two objects called chain_a and chain_c in the range of 1 A, graphically the script works and in the monitor is possible observe the distance and the residues involved, I have some problems to print out the distance values and the

Re: [PyMOL] print out distance

Hi Elsa, Good first attempt. cmd.distance will return the distance between two atoms or the average distance if you give it more than two. Most surely your chain A and chain C each have more than one atom each. So, you just get the average distance. I'm not sure what exact distances you want

[PyMOL] print quality pictures

Hello, Once I get a high quality picture from pymol, I want to put some labels, combine a few of them together, add some arrows and texts, etc. Any suggestions on what is a good way to do that so that I don't lose resolution ? I generally crop the pictures in gimp to get rid of the white space