Hi Sdat5885,
Have you started a fresh session, or did you a. load a session file or
b. did some other things you didn't mention before? It may be that you
have specifically set the highlight color for your protein. The
default is not grey, but whatever color the C alpha atom has. You
might want to
Hi Tsjerk
Now it DOES change the color of the inside of helixes. Thank you so much.
I think this is what happened. I was using the preset publication command to
generate cartoons and then changing things. Once preset publication is
invoked the command set cartoon_highlight_color, blue does not ch
> I think this is what happened. I was using the preset publication command to
Oh, you didn't tell us that! Think of the presets from
A->Action->Preset-> menus, as end-points to visualization: don't try
to change settings after you apply one of these. These are somewhat
complex scripts under the
This question fits better the pymol list.
-- Forwarded message --
From: 李雅雯
Date: 16 August 2010 12:31
Subject: pdb-l: one question about using pymol
To: pd...@sdsc.edu
Hi, thanks for your attention.
I am using pymol to do structural alignment. Pymol will return this sentence
Hi Yawen,
Yes, some atoms are left out. Please see the PyMOLWiki "align" page
(http://pymolwiki.org/index.php/Align) or type "help align" for more
information. If you want to fit given pairs of atoms, please use fit
or its appropriate variation ("help fit" in PyMOL) or the fit page on
the PyMOL
