Re: [PyMOL] global illumination, volume representation and ipython

Hi Christoph, I just pushed an update that fixes this. Cheers, -- Jason On Mon, Apr 11, 2011 at 4:55 PM, Christoph Gohlke wrote: > > > On 4/11/2011 10:05 AM, Jason Vertrees wrote: >> Hi Marius, >> Also right clicking on the volume representation raises the following error Error:

Re: [PyMOL] global illumination, volume representation and ipython

On 4/11/2011 10:05 AM, Jason Vertrees wrote: > Hi Marius, > >>> Also right clicking on the volume representation raises the following error >>> >>> Error: 2 >>> ... > > The right-click on background exception has been fixed. The code, a > few other fixes, and a new feature for testing :-), has j

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

Hi Tsjerk, > Intel GMA 950 card, 945GSE chipset, check :( The mobile Intel video drivers have been problematic for us and quite a few other graphics software groups. Some of our users have been reporting success after they upgrade their drivers. For others though, it doesn't help. On Windows t

[PyMOL] 1st Call For Papers, 18th Annual Tcl/Tk Conference 2011

18th Annual Tcl/Tk Conference (Tcl'2011) http://www.tcl.tk/community/tcl2011/ October 24 - 28, 2011 Comfort Suites Manassas Manassas, Virgina, USA Important Dates: Abstracts and proposals due August26, 2011 Notification to authors September 12, 2011 WIP and BOF reservations open Aug

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

Hey Jason, Intel GMA 950 card, 945GSE chipset, check :( So this is a known problem, and is there a workaround? Do you need additional information from my side? Cheers, Tsjerk On Mon, Apr 11, 2011 at 6:06 PM, Jason Vertrees wrote: > Hi, > >> The problem did not occur on another machine (Intel

Re: [PyMOL] global illumination, volume representation and ipython

Hi Marius, >> Also right clicking on the volume representation raises the following error >> >> Error: 2 >> ... The right-click on background exception has been fixed. The code, a few other fixes, and a new feature for testing :-), has just been pushed to the open-source branch. Cheers, -- Jas

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

Hi, > The problem did not occur on another machine (Intel Core i7, 64bit), > running Ubuntu 10.10. > On my EeePC loading a python CGO file worked fine, while loading an > empty PDB file segfaulted. So it seems to be related to loading the > coordinates, not to the displaying. Is anyone else havin

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

Hi, The problem did not occur on another machine (Intel Core i7, 64bit), running Ubuntu 10.10. On my EeePC loading a python CGO file worked fine, while loading an empty PDB file segfaulted. So it seems to be related to loading the coordinates, not to the displaying. Cheers, Tsjerk On Mon, Apr

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

Hi Jason & Tsjerk ... Just for the info that I just downloaded, compiled and tried it on OpenSuse 11.4 and it ran without any problems: PyMOL>load ../../3lzt.pdb HEADERHYDROLASE 23-MAR-97 3LZT TITLE REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION COM

[PyMOL] segmentation fault pymol 1.4 rev 3938

Hi Jason, I run into a segfault with Pymol 1.4 rev 3938 on my EEE PC, running Ubuntu 9.04. The segfault occurs when loading the PDB file. It happens regardless of the contents of the PDB file, but loading something with hetatms gives some insight in how far it goes: PyMOL>load ../../../3lzt.pdb H

Re: [PyMOL] center of mass

Hi Kanika, Jason, cmd.get_legal_name is only called in 'com' if no object name is given. The quickest workaround thus is to provide an object name for the 'com' object as third argument. Of course, it still is wise to upgrade and benefit from all those cool new features :) Cheers, Tsjerk On Mo