Hi Gudrun,
Gudrun Lotze wrote:
> Dear all,
>
> I wish to ray trace my object so it looks nice. I have chosen a mesh as
> surface representation.
>
> I did
> viewport 1024, 768
> ray 1024, 768
>
> But the mesh is black afterwards and not anymore blue.
> Is there a chance to keep the color and hav
Hi Gudrun,
> But the mesh is black afterwards and not anymore blue.
You may want to check your light position, or try a slighter blue.
> Is there a chance to keep the color and have less dominant lines for the mesh?
I'm not artistically skilled enough to know about less dominant lines,
but the
Dear all,
I wish to ray trace my object so it looks nice. I have chosen a mesh as surface
representation.
I did
viewport 1024, 768
ray 1024, 768
But the mesh is black afterwards and not anymore blue.
Is there a chance to keep the color and have less dominant lines for the mesh?
Is there a cha
Dear Gudrun,
I have no experience with PyMOL on Mac. Maybe this helps:
http://pymolwiki.org/index.php/Mouse_Controls
Deselecting objects does not help, because by default you transform in
camera space, which affects all objects. What you need is transformation
in model space, which is achieved
Try install tkinter
Tkinter uses tcl 8.4 (something...)
Troels Emtekær Linnet
Lyongade 24. 4.mf, 2300 København S
Mobil: +45 60210234
2012/2/27
> Hi Jason,
>
> I just installed pymol 1.5.0.3 on our linux machines and the segfault in
> libtcl8.5.so upon help->about is still present. Do you
Hi Gudrun,
On 02/27/2012 01:36 PM, Gudrun Lotze wrote:
> The axes appear, but the screen in pymol is now split into two sections
> with the cross covering one part. Is there a chance to move the cross
> closer to the model in one screen section?
> A bit like shown in picture on page http://pymolwi
Hi Jason,
I just installed pymol 1.5.0.3 on our linux machines and the segfault in
libtcl8.5.so upon help->about is still present. Do you have any hint when
this will be fixed?
Best regards,
Joachim
--
Dr. rer. nat. Joachim Greipel
Med. Hochschule Hannover
Biophys. Chem. OE 4350
Carl-Neuberg-Str
Dear all,
I used the following script David pointed out:
from pymol.cgo import *
from pymol import cmd
w = 0.06 # cylinder width
l = 0.75 # cylinder length
h = 0.25 # cone hight
d = w * 1.618 # cone base diameter
obj = [CYLINDER, 0.0, 0.0, 0.0, l, 0.0, 0.0, w, 1.0, 0.0, 0.0, 1.0, 0.0, 0.0,
http://pymolwiki.org/index.php/Axes
-David
On Feb 27, 2012, at 5:38 AM, Gudrun Lotze wrote:
> Dear all,
>
> is it possible to show in Pymol a little coordinate cross with axes x,y,z,
> for example like in VMD, please?
> I have a protein made from dummy atoms and there is no unit cell.
> I jus
Dear all,
is it possible to show in Pymol a little coordinate cross with axes x,y,z, for
example like in VMD, please?
I have a protein made from dummy atoms and there is no unit cell.
I just want to show clearly which plane is shown when presenting the model in
my document.
Thank you for your h
Hi Shane,
I have a script which saves a colored sequence in HTML format. See
attachment.
Example usage:
run save_colored_fasta.py
save_colored_fasta seq.html
It should be possible to copy&paste the colored sequence from your
browser to excel.
Cheers,
Thomas
Shane Neeley wrote,
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