[PyMOL] memory leak.

2012-03-30 Thread Francis E Reyes
Hi all My pymol session has developed a memory leak. While I can manipulate the session quite easily, it's constantly pushing 70-100% on my processor. Any ideas on how to fix this? (Closing and restarting only results in the same). Thanks! F - Fr

Re: [PyMOL] Editing of the pdb structure

2012-03-30 Thread Thomas Holder
Hi James, "connect_mode" is for loading. I think "pdb_conect_all" is what you are looking for: set pdb_conect_all http://www.pymolwiki.org/index.php/Pdb_Conect_All http://www.pymolwiki.org/index.php/Connect_mode Cheers, Thomas James Starlight wrote, On 03/30/12 11:53: > Hi all :) > > Rece

Re: [PyMOL] Editing of the pdb structure

2012-03-30 Thread James Starlight
Hi all :) Recently I've been needed to parametrise my short protein mollecule by ATB server for futher MD simulation. The input pdb file for that server must consist of CONNECT records at the bottom of such pdb. How I could add such missing CONNECT records for my pdb ? I've tried set connect_