Hi James,

"connect_mode" is for loading. I think "pdb_conect_all" is what you are 
looking for:

set pdb_conect_all

http://www.pymolwiki.org/index.php/Pdb_Conect_All
http://www.pymolwiki.org/index.php/Connect_mode

Cheers,
   Thomas

James Starlight wrote, On 03/30/12 11:53:
> Hi all :)
> 
> Recently I've been needed to parametrise my short protein mollecule by 
> ATB server for futher MD simulation.
> 
> The input pdb file for that server must consist of CONNECT records at 
> the bottom of such pdb.
> 
> How I could add such missing CONNECT records for my pdb ?
> 
> I've tried
> 
> set connect_mode, 1
> 
> but saved pdb still have not contained CONNECT :(
> 
> Thanks for help
> 
> James

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tu"bingen


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