Hi Martin,
I don't think there's a fix for this. Please file a bug report on the
open-source tracker.
Cheers,
-- Jason
On Mon, Apr 30, 2012 at 10:09 AM, Martin Hediger wrote:
> Dear Pymol users
> We are trying to generate a number of mutated structures using the
> mutagenesis wizard. However,
I would like to attach two proteins with a disulfide linkage via two cysteine
residues I introduce using the mutation wizard. I know the 'bond' command can
be used for intramolecular disufides, but is there a way to introduce
intermolecular disulfides?
Thanks
JK
On Mon, Apr 30, 2012 at 01:14:39PM -0400, Jason Vertrees wrote:
> This is just a quick note to let you know that as of revision 3997
> PyMOL has an improved plugin/script manager. This system was written
> by Thomas Holder as part of his PyMOL Open Source Fellowship. Some new
> features include:
>
Hi Michael,
meta information is implemented in the new plugin system. The syntax is
very simple, just put it at the beginning of the python file like this:
# License: BSD-2-Clause
# Author: Your Name
# Version: 1.0
'''
Plugin XYZ for PyMOL
Here some more general description, link to PyMOLWiki p
Hi Michael,
Thanks for this feedback. Since the inception the Script Library on
the PyMOLWiki the policy is that all deposited scripts are
open-source: http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy.
This link is "Policy" from the PyMOLWiki Scripts page.
Cheers,
-- Jason
On
Hi Julianne,
put the two molecules into one object, preferably with different chain
identifiers. Example:
alter molecule1, chain="A"
alter molecule2, chain="B"
create combined, molecule1 molecule2
delete molecule1 molecule2
Now you can bond the two atoms.
You can also use the "fuse" command wh
Hi,
On Wed, May 02, 2012 at 09:39:59AM -0400, Jason Vertrees wrote:
> Thanks for this feedback. Since the inception the Script Library on
> the PyMOLWiki the policy is that all deposited scripts are
> open-source:
> http://pymolwiki.org/index.php/Category_talk:Script_Library#Policy.
> This link i
Hi,
On Mon, Apr 09, 2012 at 11:01:35AM -0400, Jason Vertrees wrote:
> The latest commit (3995) should fix this for the Intel card. Try
> pulling the latest (3996) from the open source branch.
That worked splendidly, I am uploading pymol-1.5.0.1 with some
subversion changesets to Debian now.
Are
Hello,
I wanted to know what is the command-line syntax for finding out the number of
residues which fall within a selection made in PyMOL.
Once the selection is made, the command line shows the number of atoms selected,
but I wanted to know the number of residues present in such subsequent
selec
Hi Anasuya,
what you need is:
count_atoms byca (sele)
Cheers,
Thomas
Anasuya Dighe wrote, On 05/02/12 19:27:
> Hello,
>
> I wanted to know what is the command-line syntax for finding out the number of
> residues which fall within a selection made in PyMOL.
>
> Once the selection is made, t
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