Re: [PyMOL] syntax for lone pair removal

2012-05-30 Thread Tsjerk Wassenaar
Hey, Of course you can also escape the asterisk (just for the record): remove resn \*\*\*\* Cheers, Tsjerk On Wed, May 30, 2012 at 8:28 AM, Thomas Holder wrote: > Hi Martin, > >> when visualising data out of a GOLD docking run, where the software >> has added lone pairs to active site residue

Re: [PyMOL] regarding slerpy

2012-05-30 Thread Jason Vertrees
Greetings Priyadarshan, We don't really use slerpy anymore because that functionality is pretty much built into PyMOL itself. To learn how to easily make movies check out our Incentive Documentation (http://pymol.org/dsc) if you're a subscriber or the Movie School tutorial on the PyMOLWiki (http:/

Re: [PyMOL] Can't compile latest svn

2012-05-30 Thread Jason Vertrees
Greetings, Thomas Holder has a webpage on the PyMOLWiki indicating how he compiled the plugins (http://pymolwiki.org/index.php/User:Speleo3/VMD_plugins). I suggest following these directions if you want to try to get the molfile plugins working. When I get time, I'll make the appropriate changes a

[PyMOL] 2nd Call For Papers, 19th Annual Tcl/Tk Conference 2012

2012-05-30 Thread Andreas Kupries
[[ Notes: Colin Walker of F5 is confirmed as our Keynote speaker. http://www.f5.com ]] 19th Annual Tcl/Tk Conference (Tcl'2012) http://www.tcl.tk/community/tcl2012/ November 12 - 16, 2012 Holiday Inn Chicago Mart Plaza 350 West Mart Center Drive Chicago, Illinois, USA Important Dates: A

[PyMOL] Label using API

2012-05-30 Thread Rituparna Sengupta
Hi, Can anyone tell me how to label something using the API. I'm having trouble with it and the API usage is not listed in PyMol wiki. I use label chain d, "whatever" from the command line and it works fine. But I want to use it in a script. I tried using cmd.label("chain d", "whatever")

Re: [PyMOL] Label using API

2012-05-30 Thread Thomas Holder
Hi Ritu, when using the API, you need to quote the text label twice: cmd.label("chain d and name C1", "'whatever'") It's a string in a string :) Cheers, Thomas Rituparna Sengupta wrote, On 05/30/12 22:42: > Hi, > > Can anyone tell me how to label something using the API. I'm having > troub