Re: [PyMOL] Normalize ccp4 maps- problem

Hi Vasan, Changing the sampling of the map would require re-calculating it on a different (coarser or finer) grid. This would have only incidental effects on normalizing the map values. Hope this helps, Pete Srinivasan Rengachari wrote: Dear Pymol Users, I am a basic

[PyMOL] Adding hydrogens

Dear PyMOL list I'm adding hydrogens to a crystal structure. Upon saving, however, I realize all hydrogens have been added to the beginning of the PDB file. Can PyMOL be configured such that the hydrogens are placed at the intuitively appropriate place in the PDB file? Thanks for any hints.

Re: [PyMOL] Adding hydrogens

Hi Martin, do you have retain_order set to 1? This is not the default. Try: unset retain_order save file.pdb Cheers, Thomas Martin Hediger wrote, On 09/25/12 18:24: Dear PyMOL list I'm adding hydrogens to a crystal structure. Upon saving, however, I realize all hydrogens have been added

[PyMOL] visualising superpositions in pymol

Hi there I am fairly new to pymol and am currently using it to visualise superpositions of 2 protein structures. However, I have noticed that a lot of structural detail is lost in regions where the structures are very similar and - instead of seeing two proteins nicely superimposed - I get