[PyMOL] Building of the Carbon lattice

2012-12-27 Thread James Starlight
Dear PyMol users! I'd like to build simple 2D lattice model consisted of the Carbon atoms connected by the single bonds. Could you provide me with some script which can build such lattices of the desired dimensions ? Thanks for help James --

Re: [PyMOL] test for bonded atom

2012-12-27 Thread Thomas Holder
Hi Krisztina, > I wonder if there is any way to list atoms an atom is bonded to? Use the "neighbor" selection operator: PyMOL> select newsele, neighbor (othersele) See also: http://pymolwiki.org/index.php/Selection_Algebra > I would > like to list H bonded pairs but the available scritps (list