Re: [PyMOL] test for bonded atom

Hi Krisztina, I wonder if there is any way to list atoms an atom is bonded to? Use the neighbor selection operator: PyMOL select newsele, neighbor (othersele) See also: http://pymolwiki.org/index.php/Selection_Algebra I would like to list H bonded pairs but the available scritps

[PyMOL] Building of the Carbon lattice

Dear PyMol users! I'd like to build simple 2D lattice model consisted of the Carbon atoms connected by the single bonds. Could you provide me with some script which can build such lattices of the desired dimensions ? Thanks for help James