Hi All,
PyMol has it's own default settings, many of them are the historically accepted
ways to view structures, universally accepted colors, etc. and that is great,
because when someone uses the program they have to start with something! :)
And I realize most users probably open a pdb, work
Hi,
Just wondering how to remove the cross hair that is shown for each non-bonded
atom
(for example water molecules).
Thanks,
Pascal
-
Pascal Auffinger
IBMC/CNRS
15 rue René Descartes
67084 Strasbourg Cedex
p.auffin...@ibmc-cnrs.unistra.fr
-
On Wed, Jan 30, 2013 at 8:33 AM, H. Adam Steinberg a...@steinbergs.us wrote:
Is there anyway to change the default settings in PyMol so that when I open
the program, it is using my specified defaults? or perhaps there is a way a
script can automatically be run at startup? Or automatically run
Hi Pascal,
hide nonbonded
Cheers,
Jason
Sent from my Android. Please excuse the concision and any typos.
On Jan 30, 2013 1:10 PM, Pascal Auffinger
p.auffin...@ibmc-cnrs.unistra.fr wrote:
Hi,
Just wondering how to remove the cross hair that is shown for each
non-bonded atom
(for example
This is great, but looks like it's only for Windows? Where would one put this
pymolrc.pym file on a Mac?
http://www.pymolwiki.org/index.php/Pymolrc
On Jan 30, 2013, at 12:12 PM, Nat Echols nathaniel.ech...@gmail.com wrote:
On Wed, Jan 30, 2013 at 8:33 AM, H. Adam Steinberg a...@steinbergs.us
On Wed, Jan 30, 2013 at 10:43 AM, H. Adam Steinberg a...@steinbergs.us wrote:
This is great, but looks like it's only for Windows? Where would one put this
pymolrc.pym file on a Mac?
http://www.pymolwiki.org/index.php/Pymolrc
Quoting the wiki:
On a linux-type system, this file will be
You are correct, if I put the pymolrc.pym file in the user folder, MacPyMol
does try to read it when it starts up.
However, it errors every time.
If I put just this one command in the file and start up PyMol, it comes back
with:
File /Users/adam/pymolrc.pym, line 1
set auto_zoom = 0
On Wed, Jan 30, 2013 at 10:56 AM, H. Adam Steinberg a...@steinbergs.us wrote:
You are correct, if I put the pymolrc.pym file in the user folder, MacPyMol
does try to read it when it starts up.
However, it errors every time.
If I put just this one command in the file and start up PyMol, it
1st, thank you for your patience and help.
2nd, for those who end up trying to also do this… Apple now hides all files in
the user folder that start with a period. Therefore, the minute you hit enter
after changing the name to .pymolrc, the file disappears. You have to run a
third party app
Hi Adam and Nat,
a few clarifying remarks on this topic:
- The leading dot is optional, so everything that starts with
.pymolrc or pymolrc will be found by PyMOL. Files with dot
take precedence over files without dot.
- Files ending on .py (or .pym) will be parsed as python scripts,
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