[PyMOL] stereo image

Hi All, I want to generate a stereo image for a structure. I use pymol-diaplay-Stereo mode cross-eye stereo and then I ray the figure and save the figure. But previously I notice the others manually rotate the model and manually generate the figure. Is there something wrong for the first method?

Re: [PyMOL] stereo image

Hi Yamei, There's nothing wrong with your approach. If you like the results, and they illustrate the point your trying to make, it's good. Cheers, Tsjerk On Thu, Feb 21, 2013 at 9:22 AM, Yamei Yu ymyux...@gmail.com wrote: Hi All, I want to generate a stereo image for a structure. I use

[PyMOL] About draw_links.py by Dr. Robert Campbell

Hi, I have been trying to use the script draw_links.py at http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ to view links between each pair of c-alpha atoms present in an atom selection. Once I load a PDB (1q16.pdb) and make an atom selection, lets say : PyMOLselect pk1, name CA in resi

Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

Hi Anasuya, On Thu, 21 Feb 2013 17:10:40 +0530 Anasuya Dighe anas...@mbu.iisc.ernet.in wrote: Hi, I have been trying to use the script draw_links.py at http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ to view links between each pair of c-alpha atoms present in an atom selection.

Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

Hi, If you want to draw all bonds for all pairs between two selections, you can just use bond: bond sele and n. ca, sele and n. ca Hope it helps, Tsjerk On Thu, Feb 21, 2013 at 9:19 PM, Robert Campbell robert.campb...@queensu.ca wrote: Hi Anasuya, On Thu, 21 Feb 2013 17:10:40 +0530

Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

in the most recent version of PyMOL, which can render measurement objects with shaders, you can also use the distance command to get a similar result: set use_shaders set dash_gap, 0 distance sele and n. CA, sele and n. CA Cheers, Thomas On Feb 21, 2013, at 10:11 PM, Tsjerk Wassenaar