Thanks Markus, I'll try to examine it!
Jed,
the main problem with the profit is that I need to superimpose structures
in loop which are not always has the same sequence length. Is it possible
to superimpose each structure based on some common criterium found for each
mobile and reference
Dear all,
I've noticed that chain IDs disappear after creating symmetry-related
copies:
fetch 1ubq
- You clicked /1ubq//A/LEU`73/CG
symexp symm1, 1ubq, 1ubq and i. 30, 10
- You clicked /1ubq//(null)/LEU`73/CG
- You clicked /symm100-1//(null)/LEU`73/CG
Chain A turns into chain (null).
Dear all,
I need help.
I just start using Pymol in Ubuntu, this was advised to me since windows
give a lot of trouble.
I install pymol already on ubuntu, but I need an manual how to transport
the data from the pdb to ubuntu pymol.
I can enter pdb nicely but after I dowload the files I cannot
Should be a bug of your particular version.
I cannot reproduce it following your instructions on MacOSX
Good luck!
Gian
On 9/9/14 12:24 PM, Andreas Förster wrote:
Dear all,
I've noticed that chain IDs disappear after creating symmetry-related
copies:
fetch 1ubq
- You clicked
Hi Andreas,
good find! The most recent changes in SVN introduce multi-letter chain support.
This required a non-trivial refactoring of the internal data structure. You
found a reference counting bug, I'll fix that.
Cheers,
Thomas
On 09 Sep 2014, at 06:24, Andreas Förster
I am very unsure of your question, but I believe you're asking if you have
a PDB id, how to load that into pymol. For that, you can use the fetch
command ( http://www.pymolwiki.org/index.php/Fetch )
You type:
fetch 1acb
into the pymol interface and it will download pdb id 1acb and load it into
Hi Bernhard,
this issue came up before and we think PyMOL is doing it right. See this post
(workaround included):
http://sourceforge.net/p/pymol/mailman/message/32385858/
Cheers,
Thomas
On 09 Sep 2014, at 13:50, Bernhard Lechtenberg
blechtenb...@sanfordburnham.org wrote:
Hi all,
I have
Dear Pymol users,
I want to calculate backbone RMSD of proteins having two different
conformations (For example 2RH1 and 1F88). With the align command it
calculates the executive RMSD, but i need backbone RMSD. Please advise
something.
Regards
*Amita *
