Re: [PyMOL] naming of chain id

2014-09-16 Thread Thomas Holder
Hi Folmer and Yeping, to support upper and lower case letters, set this setting: PyMOL> set ignore_case, off Cheers, Thomas On 16 Sep 2014, at 02:44, Folmer Fredslund wrote: > Hi Yeping Sun, > > Did you solve your problem? > > According to http://www.wwpdb.org/procedure.html#toc_4 > " > Wh

Re: [PyMOL] white background is black when opaque_background is off

2014-09-16 Thread Thomas Holder
Hi Vincent, this bug was introduced in 1.7.2.0 and fixed in 1.7.2.1, please upgrade if you have the chance. Cheers, Thomas On 16 Sep 2014, at 09:10, vincent Chaptal wrote: > Sorry, I meant in the title, opaque_background set to off. > > Le 9/16/14 3:03 PM, vincent Chaptal a écrit : >> Hi

Re: [PyMOL] white background is black when opaque_background is off

2014-09-16 Thread vincent Chaptal
Sorry, I meant in the title, opaque_background set to off. Le 9/16/14 3:03 PM, vincent Chaptal a écrit : Hi all, when I use : cmd.set('''opaque_background''','''0''',quiet=0) cmd.bg_color('white') the background is black. If I set the background back to opaque, then it turns white. Is there

[PyMOL] white background is black when opaque_background is on

2014-09-16 Thread vincent Chaptal
Hi all, when I use : cmd.set('''opaque_background''','''0''',quiet=0) cmd.bg_color('white') the background is black. If I set the background back to opaque, then it turns white. Is there a way to keep the background white at all times when setting the opacity off? I'm using pymol 1.7.2. It