Re: [PyMOL] bonds in ligands for MD simulations?

Hi Vincent, can you load the 400 copies of your ligand into the same object? For example by creating a multi-model PDB file, or using a trajectory format. In that case, the 400 conformations will share the topology (the atoms and bonds) and you only have to form the bond once. Also, the residu

Re: [PyMOL] Can't import pymol2 on Windows machines

Hi Yuan, the short answer is: you can't do that with the PyMOL 1.3 Edu build. It has a built-in Python interpreter and doesn't work with your Python 2.7 installation. You could - in theory - do that with Open-Source PyMOL, check out http://pymolwiki.org/index.php/Windows_Install#Pre-compiled_Py

Re: [PyMOL] PyMOL syntax .properties file for SciTE

Hi Brenton, I'm not aware of a syntax file for SciTE. But if you find one (or create one), make sure to update http://pymolwiki.org/index.php/Script_Highlighting Cheers, Thomas On 02 Mar 2015, at 14:41, Brenton Horne wrote: > Hi, > > I'd like to know if anyone has a .properties file for th

Re: [PyMOL] scipy problem

Hi Tsjerk, thanks for the report. This only affects MacPyMOL, or more specific the Python distribution that we bundle with it. We now also provide a MacPyMOL without the bundle, which uses the system Python and doesn't suffer from this problem. When downloading Incentive PyMOL, choose MacPyMOL-