Re: [PyMOL] label

Hi Albert, Incentive PyMOL can do that, simply type: label all, stereo This feature is provided by a proprietary library and thus not available in Open-Source PyMOL. Cheers, Thomas On 16 Sep 2015, at 03:15, Albert wrote: > Hello: > > Does anybody have any idea

[PyMOL] Ploting coordinates

Hi everyone, I hope this isn’t a silly question, but I’m not sure how to do it: I want to plot some coordinates in PyMOL. Not atoms, just coordinates - they’re the output of HOLE implemented in Coot, and have the following format: 145.32307 113.91329 116.36907 0.448000.47168

Re: [PyMOL] how can we display properties?

Hi Albert, Yes, Incentive PyMOL since version 1.6 can read properties from SD files. Example: # load a file with all properties set load_object_props_default, * load example.sdf # query loaded properties get_property_list example # query the MOLID property get_property MOLID, example #

Re: [PyMOL] pymol fails to open (crash)`

Hi Joel, Were does the shortcut point to (Right-click on the icon > Properties > Target) and does it have any additional flags like forcing stereo? The default shortcut points to "PymolWin.exe -J", which will start PyMOL with "My Documents" as the working directory. Cheers, Thomas On 10