Re: [PyMOL] One window instead external and internal windows

2018-10-15 Thread Itamar Kass
Dear Thomas, I have used the one from the ubuntu repositories. Is it preferably to manually compile it? All the best, Itamar > Hi Itamar, > > Have you compiled PyMOL yourself? If yes, have you installed PyQt5? See > https://pymolwiki.org/index.php/Linux_Install#Requirements > > Cheers, > Thoma

Re: [PyMOL] One window instead external and internal windows

2018-10-15 Thread David Mathog
On 15-Oct-2018 05:44, Thomas Holder wrote: Hi Itamar, Have you compiled PyMOL yourself? If yes, have you installed PyQt5? See https://pymolwiki.org/index.php/Linux_Install#Requirements When 2.3.0a was built on Linux using the wiki's build method there were no issues getting it to pick up PyQt

Re: [PyMOL] One window instead external and internal windows

2018-10-15 Thread Thomas Holder
Hi Itamar, Have you compiled PyMOL yourself? If yes, have you installed PyQt5? See https://pymolwiki.org/index.php/Linux_Install#Requirements Cheers, Thomas > On Oct 10, 2018, at 9:11 AM, Itamar Kass wrote: > > Hi, > > I am using Pymol 2.1.0 on Ubuntu 18.04. When run, it opens two windows

Re: [PyMOL] change surface charge color

2018-10-15 Thread Thomas Holder
Hi Abhik, Assuming you're talking about a ramp-colored surface. You can update the ramp from the "C" color menu (e.g.: C > grayscale), or from the command line: PyMOL> ramp_update yourramp, color=grayscale See also: https://pymolwiki.org/index.php/Ramp_New Cheers, Thomas > On Oct 13, 2018,

Re: [PyMOL] starting pymol2 withTclTk() problem

2018-10-15 Thread Thomas Holder
Hi Benjamin, You found some ancient piece of API and I'm not sure if it ever was functional. Since the Tcl/Tk GUI is deprecated, we'll probably just remove that broken startWithTclTk method. The pymol2 module is a low level interface and doesn't provide a GUI out of the box. It's also little u

[PyMOL] starting pymol2 withTclTk() problem

2018-10-15 Thread Benjamin Schroeder
Hej everybody, I would like to start to write an own PyMol modul.  Therefore I thougth it would be interesting to use the pymol2 package. But here I encounter a problem starting the GUI. Can you spot what is missing here? my code: import pymol2 p1 = pymol2.PyMOL() p1.start