[PyMOL] Issues when displaying surfaces of two objects in two distinct display grids

2020-01-20 Thread Vedat Durmaz
Hi altogether,  using Pymol open source 2.4, I'm trying to simultaneously display two objects (OB1 & OB2) side-by-side in a grid (>Display>Grid>By object). So I have one object (OB1) on the left part and one (OB2) on the right. Now, in order to have two surfaces on the left covering different

Re: [PyMOL] How to print the time stample on each frame of the movie for molecular dynamics trajectory in Pymol?

2020-01-20 Thread Thomas Holder
Hi Yeping, It's possible to create a such a label, but unfortunately it's a bit complicated. The following script places a label with 2500 states in the upper right corner of the display area. # create a discrete multi-state object with one labeled atom per state pseudoatom tmp, label=pending

Re: [PyMOL] diaplay actural sizes in Pymol

2020-01-20 Thread Thomas Holder
Hi Ting, This will display the assemblies (biological units) in a grid. The result should look like in the attached image. set assembly set all_states set grid_mode fetch 1igt 1s58 3j3i 2ztn 6ui6 5wtf 3iyo, type=mmtf zoom The "assembly" setting replaces the use of type=pdb1. It works with