Re: [PyMOL] [EXTERNAL] broken DNA cartoon

The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms. This is outside the bond length range that PyMOL accepts so the bond is absent when you display the model as line or stick model. This is why the cartoon is missing or broken. 5FUR is a 8.5 Angstrom cryo EM structure. Perh

Re: [PyMOL] broken DNA cartoon

Hi Adam -  That's a fun one.  It appears that most of these O3' atoms are not bonded to the P atom of the following nucleotide, which you can see if you show the DNA chains as sticks.  Creating a bond via `bond atom1, atom2` results in a normal cartoon.  Fortunately, the DNA chains are sequenti

Re: [PyMOL] Selection of elements in object

Hello Henrik, your syntax is not correct: select name_for_selection, selected_parts https://pymolwiki.org/index.php/Select eg. select my_carbons, elem C & obj will select atoms that are element C AND in obj and calls this selecti

[PyMOL] Selection of elements in object

Dear Pymol users Would anyone be able to help with the correct syntax used for selecting specific elements within an object? For example, I would like to be able to select only carbon or hydrogen. select elem c (works but selects all the carbons in my project) select elem c, obj (this selects al

[PyMOL] Accessibility Conformance Report

My university is aking me to provide the following information: Please include an Accessibility Conformance Report (ACR) for this solution as an attachment. The vendor should be able to provide an ACR that meets the followi