I have a couple of problems with pymol 0.98, but they only happen once in
a while and for no apparent reason. The problem I'm having right now is
that pymol just won't start up. I double-click the pymol icon (or try to
open a PDB or pse file), it goes into the 'launching pymol' routine, the
If you set the mouse mode to 3-button editing mode, you'll see that
Shift-Left and Shift-Middle are RotF and MovF, respectively.
So with nothing selected, if you do Shift-Left, grab an atom of a molecule
and move it, the whole molecule will rotate while all other structures are
fixed. The
If you have the molecules mol01 and mol02 open, you can type mol_list
= cmd.get_names() to get the list of molecules put into the variable
mol_list: ['mol01' ,'mol02'].
Now let's say you've got those two molecules open and you've made some
selections within those two molecules. The GL window
Okay, it seems that set auto_zoom, off does work for PDB files, but not
for SDF files. I have a python script that gives these three commands:
set auto_zoom, off
load gsk_77553_l.sdf
show sticks, gsk_77553_l
But when you call the script, this is what happens in pymol
PyMOLset auto_zoom, off
I can't seem to turn off the auto_zoom feature. Whether I have turned it
on or off, pymol always zooms in on a newly 'load'ed object. Is there any
way to load a file without changing the view? Using get_view before
loading the file and set_view after loading works, but it seems pretty
