Thanks Warren and Tsjerk for your hints. This will keep me busy for a
while playing with options.
Andy
Andrew D. Fant wrote:
> Is there an easy way to refer to/select a portion of a molecular
> surface that is within a given distance of another molecule's surface?
> I'm
Is there an easy way to refer to/select a portion of a molecular
surface that is within a given distance of another molecule's surface?
I'm trying to generate some graphics for a presentation on a signaling
pathway, and I want to show just the part of each peptide's solvent
accessible surface
Has anyone gotten pocketpicker to work with version 1.0? I installed it
and fixed the paths in the modules to reflect the install location
(including fixing the number of pathname separators), but when I start
it from the plugins menu, it just sits there. It should pop up the
control panel, but no
Afternoon all,
I apologize if this has been hashed over on the list in the past. I haven't
been keeping up like I used to.
Is there a good way to calculate and color residues by hydrophobicity in
pymol? A google search showed only a very simple script that was based entirely
on a single-resi
Has anyone looked into making pymol plugins work with any of the sundry
distributed resource management systems (gridengine, lsf, pbs, condor, etc.)?
I have a cluster that could make short work of a lot of computations that I
want to visualize in pymol, but currently, that would mean installing
Has anyone done anything with with making PyMol able to display pharmacophores
as CGOs? Being able to align molecules in pymol with a defined pharmacophore
would be nice too, but I realize that doing that would require much more effort
from some developer. For the time being, it would be good t
