[PyMOL] Displaying hydrophobic contacts

2010-06-22 Thread Angela Gray
Hi everyone, I am trying to find a way to display hydrophobic (non-polar) interactions in PyMOL, the same way as we can display polar contacts. I am pretty sure this can be done. Does anyone know the command? Many thanks in advance. Angela -- Angela Gray -- Angela Gray

[PyMOL] PyMOL loop

2010-04-20 Thread Angela Gray
omatically apply the mutation for each residue and then save the peptide each time. Does anyone know of a script that can perform this? Many thanks, Angela -- Angela Gray -- Download Intel® Parallel Studio Eval Try the ne

[PyMOL] Automatic modification of structures in PyMOL

2010-04-19 Thread Angela Gray
new amino acid binds at both ends. I was wondering if there is a way in which Pymol can “swap” an existing side chain at position N on the peptide for any other side chain in an automated fashion? Any help much appreciated. Angela -- Angela Gray

[PyMOL] Automatic modification of structures in PyMOL

2010-04-19 Thread Angela Gray
new amino acid binds at both ends. I was wondering if there is a way in which Pymol can “swap” an existing side chain at position N on the peptide for any other side chain in an automated fashion? Any help much appreciated. Angela -- Angela Gray