Re: [PyMOL] Coordinates of a mesh

2011-08-25 Thread Bjoern-oliver Gohlke
something in the wrong manner?? Zitat von Troels Emtekær Linnet : > Can you provide the error message? > > > > 2011/8/25 Bjoern-oliver Gohlke < > bjoern-oliver.goh...@student.uni-tuebingen.de> > >> Hi, >> >> I actual try to get the coordinates of the me

[PyMOL] Coordinates of a mesh

2011-08-25 Thread Bjoern-oliver Gohlke
Hi, I actual try to get the coordinates of the mesh from a protein/selection. At first I run the following command: open("pymol.mesh","w").write( cmd.get_povray()[1] ) There I get points shifted by one axis or something like that. Then somebody here from the mailinglist tells me that I have to u

[PyMOL] Pseudoatoms

2010-12-03 Thread Bjoern-oliver Gohlke
Hi, I would like to generate a bounding box (grid) of pseudoatoms. I do this by the following command: cmd.pseudoatom('grid', pos=[i,j,k], color='white') My problem is, that from step to step, the algorithm slow down. I think that in each step pymol build up a new object. But he should only