Olivier,
But how do I find out specular's (or ANY variable's) value without
changing it?
I wrote a little extension called 'grepset' that does what you want and it
is great for finding out about other settings.
It is available at the pymol wiki site:
Evangelos,
Maybe you could write a wizard instead of a script, look at
C:\..\pymol\modules\pymol\wizard\renaming.py
Zac
evangelos papadopoulos wrote:
Hello all,
I am using the windows binaries for PyMol. Whereas in Python it is
easy to do a:
a=raw_input()
When I use PyMol under
Andreas Henschel wrote:
Is it the only possibility to put all functions
that share memory in the same plugin?
no. you can do the following:
from pymol import cmd,stored
stored.colorDict = {
'blue': '/1ewf//A/1-217 and not hetatm',
I try to add comment lines in my pml scripts but I don't know how to do.
I tried #, /*, //, !-- or -- characters but everything fails.
use '#' but on a line of its own not at the end of
line containing a pymol command, like this:
# color 1DHS in red
color red, 1DHS
'#' seems to be incorrect:
It is not incorrect.
If you post your script and how you use it we might be able to help.
Also, if you have something in you $HOME/.pymolrc or $HOME/.pymolrc.py
you should try temporarily moving these files elsewhere and trying again.
Something may have gone wrong
I have the impression that this driver release (nvidia 7664)
fixed the need of the setting stereo_double_pump_mono.
This might effectively double the performance of Nvidia cards
configured to support quad-buffered stereo.
Can anyone confirm this?
Zac
Hello Ramesh,
Is it possible to do the labelling using single letter codes for the
amino acid residues rather than the three letter codes?
Yes.
1. Add this to your $HOME/.pymolrc file:
# start $HOME/.pymolrc modification
one_letter = {'VAL':'V', 'ILE':'I', 'LEU':'L', 'GLU':'E', 'GLN':'Q',
Hi,
I've installed the nvidia driver 7664 and it works very well
with PyMOL 0.98 under Linux (Centos4/rhel4) without crashes so far.
Zac
--
Ezequiel PANEPUCCI, Ph.D. - Institut Pasteur
Plate-Forme 6 - Cristallogénèse et Diffraction des Rayons X
Douglas Kojetin wrote:
Building on the two previous posts, is it necessary to use 'viewport'
before executing 'ray'?
this:
ray 2000, 2000
instead of:
viewport 700, 700
ray 2000, 2000
I didn't quite understand your post. The viewport command prior to ray
tracing is just so you have
yvonne leduc wrote:
I would like some confirmation or explanation about the differences I
see, and the way I understand it.
Hello Yvonne,
The command ray does not care about the size of your display, it may
even be used in batch mode on a computer that does not have a monitor
attached to it
Nat Echols wrote:
I'm trying to use Robert Campbell's draw_axes script with PyMOL 0.97 on
Linux. Is there a simple way to get stock PyMOL to recognize stock CCTBX?
I'm not having any success here. (If I have to I'll use the special
distribution on the lab's Mac, but I'd rather just get it
Hello There,
I am trying to download the CVS version from pymol but
I get a connection refused message.
Logging in to
:pserver:anonym...@cvs.pymol.sourceforge.net:2401/cvsroot/pymol
CVS password:
cvs [login aborted]: connect to
cvs.pymol.sourceforge.net(66.35.250.207):2401 failed: Connection
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