Re: [PyMOL] Whitespacing?

to something, I'm more than willing to run it on these scripts, push them back to github and copy them back onto the wiki. -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no - Blessed are the flexible, for they can be tied into knots

Re: [PyMOL] rotate about an abitrary axis

https://lists.sourceforge.net/lists/listinfo/pymol-users -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE: new email adress) - Blessed are the flexible, for they can be tied into knots. - import Numeric import LinearAlgebra import math

Re: [PyMOL] problem in saving images or session

window. Writing commands into the main viewing window works fine, though. Regards, Siv Hollup -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE: new email adress) - Blessed are the flexible, for they can be tied into knots. -

[PyMOL] redefining coordinate systems

don't know where to input them to get the effect that I want in PYMOL :) Btw, thanks very much for the help with the spheres, that worked out just great :) Cheers, Siv -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE: new email adress

[PyMOL] building centroids for residues

appriciated :) Cheers, Siv -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE: new email adress) - Blessed are the flexible, for they can be tied into knots. -

[PyMOL] residue replacement tables

the equivalent atoms in residues? By tables I mean something as simple as this: res a CB CG CD NE etc res b CB x CG x CD x NE NZ etc Regards, Siv Hollup -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE

[PyMOL] pdb files with many chains

3.00 ATOM 27 CA LYS 957 43.410 2.919 23.826 1.00 2.00 ATOM 28 CA ALA 958 43.936 6.085 21.764 1.00 1.00 TER znip many more fragments -- Siv Midtun Hollup PhD Student Dept. of Informatics University of Bergen, Norway s...@ii.uib.no (NOTE: new email adress

[PyMOL] models with reduced coordinate sets

Hi, I have pdb files with c alpha coordinates and a centroid coordinate set for each residue, and I'd like to make a ball-and-stick model where all the c alpha atoms are connected like a backbone, and the centroids are connected to the appropriate c alpha atom. Can this be done in pymol, and if