Hi,
I'm trying to install PyMOL-v1.5.0.4-Linux-x86_64 on Linux Mint 13.
After successful unpacking, sh-ing and copying into /usr/local/bin/pymol
I tried to execute Pymol from the terminal, but error came out:
vitali@vs-Think ~/install/pymol $ pymol
/home/vitali/install/pymol/pymol.exe: 1:
card?
Cheers,
-- Jason
On Tue, Feb 14, 2012 at 5:27 PM, Vitali Stanevich stanev...@wisc.edu
wrote:
Hi,
I recently installed a new version of licensed pymol 1.5. It works ok
with
small molecules (25 kDa). But, unfortunately, I found that after I load
relatively large molecules (60
, you need the use_shaders setting turned on.
Cheers,
-- Jason
On Thu, Feb 16, 2012 at 2:09 PM, Vitali Stanevich stanev...@wisc.edu
wrote:
Jason,
I did install latest driver for a card (295.20) from nvidia site. The
problem still exists. Any other suggestions?
Thanks,
Vitali
Hi,
I recently installed a new version of licensed pymol 1.5. It works ok with
small molecules (25 kDa). But, unfortunately, I found that after I load
relatively large molecules (60 kDa) everything really slows down,
movements become somewhat abrupt and etc. At the same time, I can open this
these residues, but is there any way to depict these hydrogen
bonds also and the distances?
Dr. Jayashree Ramana
http://www.juit.ac.in/bio/jsr.php
--
*From:* Vitali Stanevich stanev...@wisc.edu
*To:* rjayashree13-scie...@yahoo.co.in rjayashree13-scie...@yahoo.co.in
check this out:
http://www.pymolwiki.org/index.php/InterfaceResidues
if you want faster and easier, but less reliable (in my opinion) way, you
can analyze your .pdb with PISA:
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
vitali
On Sun, Nov 20, 2011 at 1:51 AM,
have a look at this link:
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Morph_with_Chimera
disregard morph part. you can modify script to contain frames instead of
states. i installed ffmpeg from repositories on ubuntu and don't remember
any issues with kodecs.
vitali
On Wed, Nov
one more thing: ffmpeg script at that link didn't work for me so i had to
modify it like that
ffmpeg -f image2 -qscale 5 -r 24 -b 9600 -i image%d.png movie.mpg
On Wed, Nov 9, 2011 at 11:22 PM, Vitali Stanevich stanev...@wisc.eduwrote:
have a look at this link:
http://strucbio.biologie.uni
