[PyMOL] Extra electron denity map is not visible in pymol

Hello everybody I have two different isoforms of a crystals of different of 3.0A (SAD Dataset) and 2.5A resolution. In one crystal form a dimer is present is ASU, where as in another crystal form it is present as a tetramer. I want to make a image which should show the extra elctron density

[PyMOL] draw the axes

Hello all I am working on a proetin having different domains. I would like to make movie and draw some axis on my structure which represent the axis of libration and translation. Movie would present the domain conformation changes and its relevence with biology. I checked on the pymol wiki but i

[PyMOL] stereo image for publication

Hello all I am making stereo image for the publication purpose. I am going through this procedure. I save both left and right stereo images from the pymol.i use microsift power point bring them ~63mm closer irrespective of their size and save them as a image file.Then i use photoshop to label them

[PyMOL] label a stereo .png image in pymol

Hello all I have made a stereo image in pymol and photoadobeshop. But, i would like to label the image file which should like a stereo image label. how that can be done in the pymol. I can do it in photoadobeshop .problem lies her that i am not sure is the labels are really stereo or not? can

[PyMOL] how to zoom during movie

HEllo all I am trying to make a movie , in which i would like to rotate the struture at X-axis, rather than Y-axis and followed by zoom out of the particular state of the frame to make more realistic and expalnatory. I looked into pymol wiki as well as tutorial of the pymol. I could make the

[PyMOL] rotation axis representation with arrows and shaft

Hi all I am working with a multidomain protein. which is present in closed and open conforamtion because of the motion in the domains of the protein. I would like to describe the roation angle of the different domains of the protein and the direction of the domain motion of my structure as a

[PyMOL] selection partcular part of the model

Hello I would like know, how can i show the electron density map of the only selcted part along with my ligand in pymol. I donot like to show the extra density. I guess isomesh map, selction site may help, but i would be interested in detail of it. I would appreciate the suggestions. Thanks in

[PyMOL] problem in showing the electron density map

Hello all I am trying to upload the ED map on pymol. but, it is not visible on the screen. Although i checked at pymol wiki and i did as it is given on the wiki. For example. I took ccp4 format map and coverted it into xplor format with mapman.(beacuse i tried with ccp4 format map with