Hi to all,
I need to open a message box dialog inside a pyMOL plug-in.
When I try the code:
import tkMessageBox
tkMessageBox.showinfo(‘title’, ‘msg’)
pyMOL crashes (the window doesn’t appear and pyMOL blocks).
I am just entering pyMOL and python. I never used Tkinter before.
Could anyone help
Hello everyone,
when I make a selection by code:
cmd.select(..)
the selection is not really shown. Pushing the button (sele) in the GUI panel
red-white small squares highlight the selection.
Is it possible to achieve the same result by code?
Please another question.
Is there a good handbook a
Thank you Paulfor the link. Very useful.
Roberto
Messaggio originale
Da: paul.ri...@uci.edu
Data: 05/02/2011 2.34
A: "rv...@libero.it"
Cc:
Ogg: Re: [PyMOL] highlighting a selection
Have you checked out the wiki?
http://www.pymolwiki.org/index.php/Main_Page
Cheers,Pau
Hi Jason,
thank you. I didn't know all the options of the select command. I am just
entering both python and pyMOL.
Thank you.
Roberto
>Messaggio originale
>Da: jason.vertr...@schrodinger.com
>Data: 05/02/2011 6.52
>A: "rv...@libero.it"
>Cc:
>Ogg: Re:
Hello everyone,
when I execute by script:
cmd.zoom('sele1', animate=1)
cmd.zoom('sele2', animate=1)
only last animated zoom is performed. (at least so looks)
Could anyone please tell me if there is a way to force the second animation to
be started only after the first one ended?
Thank you
R
Hi Thomas,
thank you for your suggestion.
I didn't tell in my post but I need to zoom interactively:
the function:
def scan():
.. # find next interesting site of the model
cmd.zoom(site, animate=1)
cmd.extend('scan', scan)
works fine but this way the user is always so near inter
Hello everyone,
trying to use a pseudoatom as label I met several problems:
1) How to move the label (pseudoatom) to a target residue?
Is there a simple command to do?
2) How to change the label without messaging the user?
The 'label' command appears not have a 'quiet' option.
3
t;interactive
>or scripted mode?
>For scripted mode you could modify the coordinates of the pseudoatom to
>be closer to the target atom or not? Otherwise look up the commands in
>"Edit" mode. BTW in Edit mode you can actually mode regular labels with
>the mouse as well (Edit M
't suppor
If I set a quite=1 option in
alter_state
label
I get errors.
.. but probably you already know.
>Messaggio originale
>Da: jason.vertr...@schrodinger.com
>Data: 28/02/2011 6.36
>A: "rv...@libero.it"
>Cc:
>Ogg: Re: [PyMOL] labeling by a pseudoato
et' option and appears not
being the same than 'cmd.label ..'
This was strange to me and (hoping I didn't make a mistake in the script) I
was curious to know the raison of this behaviour if simple to tell. If not,
please don't care: I solved (thanks to you) my probl
Hello everyone,
my plugin needs Biopython.
I wish check the Biopython installation by
try:
from Bio import AlignIO # or similar
except ImportError:
.. prompt the user with a msg ..
The problem is:
what the msg to the user?
Downloading and installing Biopython is
>still fail to work in PyMOL even if the user has installed the package
>using the external python and edited the PYTHONPATH.
>
>
>So, how about ship all the BioPython packages you need in your python
>code together with your plugin? Of course all dependencies should be
>in
;Messaggio originale
>Da: jason.vertr...@schrodinger.com
>Data: 10/03/2011 21.07
>A: "rv...@libero.it"
>Cc:
>Ogg: Re: [PyMOL] plugin dependencies
>
>Hi Roberto,
>
>This has always been a stumbling block for PyMOL. Either you compile
>from source and add any modules
aggio originale
Da: mgler...@gmail.com
Data: 11/03/2011 4.05
A: "rv...@libero.it"
Cc: ,
Ogg: Re: [PyMOL] R: Re: plugin dependencies
I really like the fact that Jason will be including more libraries with PyMOL
in the future.
I once needed to distribute a library that depended o
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