Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

2013-02-21 Thread Thomas Holder
in the most recent version of PyMOL, which can render measurement objects with shaders, you can also use the distance command to get a similar result: set use_shaders set dash_gap, 0 distance sele and n. CA, sele and n. CA Cheers, Thomas On Feb 21, 2013, at 10:11 PM, Tsjerk Wassenaar wrote:

Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

2013-02-21 Thread Tsjerk Wassenaar
Hi, If you want to draw all bonds for all pairs between two selections, you can just use bond: bond sele and n. ca, sele and n. ca Hope it helps, Tsjerk On Thu, Feb 21, 2013 at 9:19 PM, Robert Campbell wrote: > Hi Anasuya, > > On Thu, 21 Feb 2013 17:10:40 +0530 > Anasuya Dighe wrote: > >> >

Re: [PyMOL] About draw_links.py by Dr. Robert Campbell

2013-02-21 Thread Robert Campbell
Hi Anasuya, On Thu, 21 Feb 2013 17:10:40 +0530 Anasuya Dighe wrote: > > Hi, > > I have been trying to use the script draw_links.py at > http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ to view links > between each pair of c-alpha atoms present in an atom selection. > Once I load a PDB (1

[PyMOL] About draw_links.py by Dr. Robert Campbell

2013-02-21 Thread Anasuya Dighe
Hi, I have been trying to use the script draw_links.py at http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ to view links between each pair of c-alpha atoms present in an atom selection. Once I load a PDB (1q16.pdb) and make an atom selection, lets say : PyMOL>select pk1, name CA in resi 5+1