[PyMOL] Automatic modification of structures in PyMOL

2010-04-19 Thread Angela Gray
Hi everyone, I am trying to find a way, in Pymol, to remove an amino acid from a peptide and insert any other amino acid. I have been able to do this for one residue at a time using the command editor.attach_fragment(‘pk1′,’my_fragment_name’,11,0) but I have to do this in two parts so that the

Re: [PyMOL] Automatic modification of structures in PyMOL

2010-04-19 Thread David Hall
I think what you're asking for is one of the examples included in the PyMol source code. You can do this manually using the mutagenesis wizard, but it is possible to drive this wizard through scripts. The two examples can be found at:

[PyMOL] Automatic modification of structures in PyMOL

2010-04-19 Thread Angela Gray
Hi everyone, I am trying to find a way, in Pymol, to remove an amino acid from a peptide and insert any other amino acid. I have been able to do this for one residue at a time using the command editor.attach_fragment(‘pk1′,’my_fragment_name’,11,0) but I have to do this in two parts so that the