Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

2009-01-22 Thread Warren DeLano
AM To: PyMOL-users@lists.sourceforge.net Subject: [PyMOL] Command line mode on OS X 10.4 vs 10.5 Howdy, Under OS X 10.4, I can do this: [b...@flange][/nfs/home/bene] /programs/i386- mac/pymol/1.1r1/PyMOLX11Hybrid.app/Contents/MacOS/MacPyMOL -qc [b...@flange][/nfs/home/bene] echo

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

2009-01-22 Thread Ben Eisenbraun
Hi Warren, /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL -qc seems to work on our Leopard machines. Is /programs on a shared drive by any chance? Yes, it is. It's an NFS volume hosted on a linux server, so in addition to being a network volume, it's also case-sensitive. Some

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

2009-01-22 Thread Ben Eisenbraun
Hi Warren, MacPyMOL has always had problems running off of a remote NFS drive -- we've never been able to figure out why, but it is clearly something to do with the magic behind Apple's application bundles, since ordinary X11 builds run just fine. Interesting. We've been using it installed

Re: [PyMOL] Command line mode on OS X 10.4 vs 10.5

2009-01-22 Thread Ben Eisenbraun
Hi Warren, I am pleased to learn that MacPyMOL does in fact work over NFS! We're obviously subject to reporter bias in terms of hearing mostly about problems, not working solutions, but this certainly didn't work for us previously (on Panther perhaps? Well before Leopard...) I went through

[PyMOL] Command line mode on OS X 10.4 vs 10.5

2009-01-21 Thread Ben Eisenbraun
Howdy, Under OS X 10.4, I can do this: [b...@flange][/nfs/home/bene] /programs/i386-mac/pymol/1.1r1/PyMOLX11Hybrid.app/Contents/MacOS/MacPyMOL -qc [b...@flange][/nfs/home/bene] echo $? 0 But on 10.5, I get this: [b...@macintel27][/nfs/home/bene]