Hi folks,
* Warren DeLano war...@delsci.com [2005-08-10 16:41] wrote:
James,
PyMol would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used
Just hold down ALT/OPTION and type in the peptide sequence. The
numbering
Hi pymolers
is it possible to generate a template nucleic acid structures from
sequence in pymol?
Blanton Tolbert
PhD Candidate
University of Rochester
Biophysics and Structural Biology
575 Elmwood Ave
Rochester, NY 14642
Blanton Tolbert
PhD Candidate
University of Rochester
Biophysics
Hi,
I just felt like making a correction to the language I used. It seems a
few words went missing!
* Robert Campbell r...@post.queensu.ca [2005-08-11 11:28] wrote:
I had already written a script to do this, but making it easier to
specify the exact phi/psi angles to use. I borrowed bits of
Hi Blanton,
* Blanton Tolbert blanton_tolb...@urmc.rochester.edu [2005-08-11 11:53] wrote:
Hi pymolers
is it possible to generate a template nucleic acid structures from
sequence in pymol?
Not as far as I've found. There are other programs that can do this:
B (aka Biomer)
Hello,
This may be slightly off-topic, but I was wondering whether PyMol
would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used for
structural refinements (minimizations, etc.) elsewhere.
If PyMol cannot do this, is
James,
PyMol would allow one to enter a peptide sequence (generally short in
length) to create a template structure that can then be used
Just hold down ALT/OPTION and type in the peptide sequence. The
numbering will be arbitrary, but at least you'll have something to work
with.
Hi James,
Sounds like you want a homology model type set up, ie generate
coordinates based on a template. Modeller can do this and an easier way
is via the swissmodel
http://swissmodel.expasy.org//SWISS-MODEL.html
If however you want a relatively random structure then pymol _can_ do
this.
Thanks for the prompt responses, Warren and Joe! Works like a charm!
Now, I just wish that my Kensington Expert Mouse could function as a
true three button mouse...is there a keystroke that mimics the third
mouse button?
Thanks again,
james