Is it possible to load a pdb file and have pymol skip making bonds?
There's a bunch of undocumented options to load, but I don't think any
of them do what I want. I have a file where there's a bunch of
jumbled atoms and there's no relation between them, just thousands in
the same place and pymol
actually, you can ignore this email, it seems pymol was having issues
because there were a bunch of CONECT records, if I delete those, pymol
actually loads it really fast. Kind of odd behavior, but interesting.
-David
On Thu, Apr 22, 2010 at 2:14 PM, David Hall li...@cowsandmilk.net wrote:
Is
Hi David,
Check out the connect_mode setting:
set connect_mode, 1
# no bonds
fetch 1cll
Cheers,
-- Jason
On Thu, Apr 22, 2010 at 2:14 PM, David Hall li...@cowsandmilk.net wrote:
Is it possible to load a pdb file and have pymol skip making bonds?
There's a bunch of undocumented options to
I started a pymolwiki page for this at
http://www.pymolwiki.org/index.php/Connect_mode so I had something to
benchmark. If someone knows what connect_mode=3 does, please fill it
in. The code in layer2/ObjectMolecule2.c is probably where to start
if you want to take a stab at figuring it out.
