Re: [PyMOL] Loading non-standard PDB file

2002-03-08 Thread Holly Miller
Warren, Thanks for the quick reply! > >Right now PyMOL has pretty limited connectivity detection > capabilities for "in-process" structures, which do not exhibit normal > bond lengths and atom separations. A workaround would be to passage > the structure through energy minimization (using a

RE: [PyMOL] Loading non-standard PDB file

2002-03-08 Thread DeLano, Warren
ginal Message- > From: Holly Miller [mailto:mil...@pharm.sunysb.edu] > Sent: Friday, March 08, 2002 10:57 AM > To: PyMol Users > Subject: [PyMOL] Loading non-standard PDB file > > > Hi! > > I am a new PyMol user. I want to look at an 'in progress' >

[PyMOL] Loading non-standard PDB file

2002-03-08 Thread Holly Miller
Hi! I am a new PyMol user. I want to look at an 'in progress' structure from a collaborator. When I load the pdb into PyMol there are bonds between atoms that shouldn't be bonded. This is mostly (if not only) in the bound DNA part of the structure. Is it possible to change the parameters by which