Inviato: Mercoledì 13 Marzo 2013 18:26
Oggetto: Re: [PyMOL] PyMOL to 3D PDF
Hi Gianluigi.
The line goes into LaTeX.
I guess it tells something about the center of the molecule,
or some light settings.
Have you tried:
save pymol.idtf, all
(or some other selection)
The line should come out in t
1.5.0.3 on an iMAC.
>
> Thanks,
>
> Gianluigi
>
>
>
>
>
> Da: Troels Emtekær Linnet
> A: Mike Marchywka
> Cc: pymol-users@lists.sourceforge.net
> Inviato: Mercoledì 13 Marzo 2013 13:01
> Oggetto: Re: [PyMOL] PyMOL to 3D PDF
>
>
&
@lists.sourceforge.net
Inviato: Mercoledì 13 Marzo 2013 13:01
Oggetto: Re: [PyMOL] PyMOL to 3D PDF
Hi Mike.
Try the example pdfs at:
http://pymolwiki.org/index.php/3d_pdf
1zqa PDF
beamer 1zqa PDF
Troels Emtekær Linnet
Ved kløvermarken 9, 1.th
2300 København S
Mobil: +45 60210234
2013/3/13 Mike Marchywka
however :) I may try this again if I have 3D data from
pymol or R
Thanks.
> From: tlin...@gmail.com
> Date: Wed, 13 Mar 2013 13:01:17 +0100
> Subject: Re: [PyMOL] PyMOL to 3D PDF
> To: marchy...@hotmail.com
> CC: pymol-users@lists.sourceforge.ne
13/3/13 Mike Marchywka
>
>
>
>
> > From: blaine-moo...@ouhsc.edu
> > To: tlin...@gmail.com
> > Date: Wed, 13 Mar 2013 04:45:59 -0500
> > CC: pymol-users@lists.sourceforge.net
> > Subject: Re: [PyMOL] PyMOL to 3D PDF
> &g
> From: blaine-moo...@ouhsc.edu
> To: tlin...@gmail.com
> Date: Wed, 13 Mar 2013 04:45:59 -0500
> CC: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] PyMOL to 3D PDF
>
> PyMOL will also save surfaces in addition to cart
From: Troels Emtekær Linnet [tlin...@gmail.com]
Sent: Wednesday, March 13, 2013 4:19 AM
To: Mooers, Blaine H.M. (HSC)
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] PyMOL to 3D PDF
Yeah.
That is a cool feature, and is kind of the "future" of publishing.
Yeah.
That is a cool feature, and is kind of the "future" of publishing. :-)
Or at least, a very powerful tool for teaching.
*But it is sad that it only have cartoon export.*
I wish that it could include other representations.
For now I use Jmol, which can export the *whole representation in the
I saw Jason Vertrees update of http://www.pymolwiki.org/index.php/3d_pdf.
It has the address to the source code for u3d-1.4.3. I could not compile earlier
versions of this program on a Mac running Snow Leopard, but I had
success with this version. I followed Jason's directions for compiling on
Linu
