Hi Abida,
thanks for the PDB file that you sent me off-list.
It is a naming conflict, you have more than one chain A which have
overlapping residue numbers and even IDs. You can still load them like this:
PyMOL> set retain_order
PyMOL> load complex.1.pdb
PyMOL> as cartoon
I also suggest to fix
Thomas and Martin I have tried both suggestions. Still it did not work
out.RegardsAbida
From: abida_sidd...@hotmail.com
To: pymol-users@lists.sourceforge.net
Subject: Pymol visualization problem
Date: Tue, 8 Jan 2013 10:12:46 +0500
Hello,
I have docked one protein named 'L1'( 450 amino ac
Hi Abida,
if the PDB has multible models, you can also enable the "all_states"
setting instead of modifying the file.
PyMOL> set all_states
If this doesn't solve the issue, I guess it's a chain naming conflict
with duplicate chain identifiers. Feel free to send me the PDB file
off-list and I'll
Hi Abida
Is it possible that you have multiple states in your PDB file? Try
clicking the ">" arrow in the bottom right corner of PyMOL and see if
you can display the other protein. If so, you probably need to delete
the "MODEL" and "END" from your PDB file. Then all should appear at once.
Mar
