Re: [PyMOL] assigning secondary strux to artificial AAs

2012-11-23 Thread Thomas Holder
Hi Jonny, I think it should be sufficient to have the atom names along the backbone correct (CA, N, C) and to have increasing residue numbering. If you like you can send me your file and I'll have a look. Cheers, Thomas Johnny Pham wrote, On 11/15/12 09:41: > Hi, > > I was wondering if I have

[PyMOL] assigning secondary strux to artificial AAs

2012-11-15 Thread Johnny Pham
Hi, I was wondering if I have unnatural amino acids in beta sheet mimicking peptides, is there a way to have them show up as a beta sheet in the cartoon representation? I understand the code: alter 1-11/, ss='S' as an example of assigning residues 1-11 as a beta sheet but how do I tackle artific