Does anyone know how to apply these biometric constraints to generate a
dimer of my molecule
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK
350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.00 0.00 0.000.0
REMARK 350
Hi Kanika,
You're right about the columns for translation and rotation. But since in
your case it's an identity matrix, it's not going to help you achieve your
goal.
Cheers,
Tsjerk
On Feb 26, 2011 8:14 AM, "kanika sharma" wrote:
Does anyone know how to apply these biometric constraints to
Hi Kanika,
Let's say your protein is called 'protein'. Then you can obtain the other
unit corresponding to your second biomt operation as:
create unit2, protein
alter_state 1,unit2,(y,z)=(-y,40.6-z)
Note this is a shorthand specific to your case. For a full biomt record (R
t), with R being the r
Iv applied the foll eq:
load 1b8e.pdb, A
create B,A
alter_state 1,B,(x,y,z)=(x,-y,40.60-z)
it should form a dimer of my protein but the object "B" is same as my
monomer with no change... i am unable to find the error..
On Mon, Feb 28, 2011 at 12:39 PM, Tsjerk Wassenaar wrote:
> Hi Kanika,
>
>
Hi Kanika,
'b' is a selection keyword. For that reason it doesn't make a good
object identifier. Try
load 1b8e.pdb, 1b8e_A
create 1b8e_B,1b8e_A
alter_state 1,1b8e_B,(x,y,z)=(-x,y,33.43-/z)
Not that the numbers are different. In 1b8e.pdb I find:
REMARK 350 BIOMT1 1 1.00 0.00 0.000
M really sorry for the wrong information guys...script helped a lot..
If my protein is a dimer...Chain A,BHow can i apply the script
here?i dun know for 2 chains
Thank you..in advanceapologies for previous mistake...
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BI
this is an identity matrix so will not make any change,i thinkbut the
file says so...
can any one help me...!!
Regards,
Kanika
On Mon, Feb 28, 2011 at 1:26 PM, kanika sharma wrote:
> M really sorry for the wrong information guys...script helped a lot..
>
> If my protein is a dimer...Chain A
