post to pymol mail list
Thank you very much!
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If you would like to use a server for protein-protein docking, you can
check out the nice list on the wikipedia page for CAPRI.
http://en.wikipedia.org/wiki/Critical_Assessment_of_PRediction_of_Interactions#List_of_predictions_servers_participating_in_CAPRI
If you're looking for actual pieces of
Hi Mohan Raj,
>From the description it is clear that Pymol is a *visualization*
program. So, no, it can not do simulations of any sort.
Cheers,
Tsjerk
On Wed, Feb 24, 2010 at 1:36 PM, mohan raj wrote:
> hi all:
>
> i am a new to pymol. could some one tell me more about the programs
> invol
I'm afraid not.
You should use docking programs (
http://en.wikipedia.org/wiki/Macromolecular_docking).
Cheers,
Annalisa
2010/2/24 mohan raj
> hi all:
>
> i am a new to pymol. could some one tell me more about the programs
> involved in ligand interaction.
>
>could i do protein prote
hi all:
i am a new to pymol. could some one tell me more about the programs
involved in ligand interaction.
could i do protein protein interaction simulateions using pymol???
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elect exposed, query in tmp
>
> dele tmp
>
>
> # visual confirmation
>
> color white
>
> color red, byres exposed
>
> set sphere_solvent
>
> as spheres
>
> orient
>
>
> Cheers,
> Warren
>
>> -Original Message-
>> From: Yasser A
or white
color red, byres exposed
set sphere_solvent
as spheres
orient
Cheers,
Warren
> -Original Message-
> From: Yasser Almeida Hernandez [mailto:pedro...@fenhi.uh.cu]
> Sent: Friday, June 05, 2009 9:18 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Hi all
I want to make a python script to list the surface residues of a
protein. The idea is import the pymol module inside the script,
receive the pdb file to be analyzed and run the pymol's commands to do
this task. It is possible..? the script is to tun in a classical
terminal...
Thanks...
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