Hi Tomas,
for structures from the PDB, PISA offers you XML download.
Example:
http://www.ebi.ac.uk/msd-srv/pisa/cgi-bin/interfaces.pisa?2x19
You could write a python script to load these results into PyMOL.
Cheers,
Thomas
2011/3/14 Tomáš Kučera:
> Hello,
>
> yes, I tried pisa, works great, b
Hi Tomas,
have you checked PISA?
http://pdbe.org/pisa
You can also run PISA locally, it's part of the CCP4 suite (however,
the output is not that easy to parse).
http://www.ccp4.ac.uk/
Cheers,
Thomas
2011/3/14 Tomáš Kučera:
> Hello pymol users,
>
> can you help me please how to calculate inter
Hi Tomas,
> I found this website http://crick.mbu.iisc.ernet.in/~PIC/index.html,
> but I would rather use pymol if possible.
I suggest you only use PyMOL to visualize the results of a validated
calculation, or use it to run a script/program that performs the
calculation and then view the results.
Hello pymol users,
can you help me please how to calculate interaction surface between 2
subunits of my protein?
I found this website http://crick.mbu.iisc.ernet.in/~PIC/index.html,
but I would rather use pymol if possible.
Thanks a lot, Tomas
--
S pozdravy T. Kučera
-
