Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-13 Thread Tsjerk Wassenaar
Hey :) After removing the svn source copy, as well as the pymol version installed globally through apt-get, followed by downloading the source anew and compiling, I ended up with a working copy. Apparently there were some version conflicts... The take home message: clean up before cooking :) Che

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Jason Vertrees
Hi Tsjerk, > Intel GMA 950 card, 945GSE chipset, check :( The mobile Intel video drivers have been problematic for us and quite a few other graphics software groups. Some of our users have been reporting success after they upgrade their drivers. For others though, it doesn't help. On Windows t

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Tsjerk Wassenaar
Hey Jason, Intel GMA 950 card, 945GSE chipset, check :( So this is a known problem, and is there a workaround? Do you need additional information from my side? Cheers, Tsjerk On Mon, Apr 11, 2011 at 6:06 PM, Jason Vertrees wrote: > Hi, > >> The problem did not occur on another machine (Intel

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Jason Vertrees
Hi, > The problem did not occur on another machine (Intel Core i7, 64bit), > running Ubuntu 10.10. > On my EeePC loading a python CGO file worked fine, while loading an > empty PDB file segfaulted. So it seems to be related to loading the > coordinates, not to the displaying. Is anyone else havin

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Tsjerk Wassenaar
Hi, The problem did not occur on another machine (Intel Core i7, 64bit), running Ubuntu 10.10. On my EeePC loading a python CGO file worked fine, while loading an empty PDB file segfaulted. So it seems to be related to loading the coordinates, not to the displaying. Cheers, Tsjerk On Mon, Apr

Re: [PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Abhinav Verma
Hi Jason & Tsjerk ... Just for the info that I just downloaded, compiled and tried it on OpenSuse 11.4 and it ran without any problems: PyMOL>load ../../3lzt.pdb HEADERHYDROLASE 23-MAR-97 3LZT TITLE REFINEMENT OF TRICLINIC LYSOZYME AT ATOMIC RESOLUTION COM

[PyMOL] segmentation fault pymol 1.4 rev 3938

2011-04-11 Thread Tsjerk Wassenaar
Hi Jason, I run into a segfault with Pymol 1.4 rev 3938 on my EEE PC, running Ubuntu 9.04. The segfault occurs when loading the PDB file. It happens regardless of the contents of the PDB file, but loading something with hetatms gives some insight in how far it goes: PyMOL>load ../../../3lzt.pdb H