I need to build a cyclic peptide as the initial conformation for
further simulations, not only for displaying purposes.
I will try what you say and I will see.
Thank you.
-- Moshe Goldstein
Quoting Tsjerk Wassenaar :
Hi Moshe,
No it isn't. PyMOL is a molecular viewer/graphics engine, not
: [PyMOL] trying to build cyclic peptides with PyMOL
Hello.
I am new to PyMOL.
Very easily I succeeded to build a linear peptide, given its sequence.
I want to build a cyclic peptide for the same sequence, connecting the
C-terminus with the N-terminus. I know that the bond that is created
that way
...@fh.huji.ac.il
Sent: Thursday, February 14, 2008 4:18 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] trying to build cyclic peptides with PyMOL
Hello.
I am new to PyMOL.
Very easily I succeeded to build a linear peptide, given its sequence.
I want to build a cyclic peptide for the
Hi Moshe,
No it isn't. PyMOL is a molecular viewer/graphics engine, not a
modeling package. However, it's not too hard to do using your
favourite MD package. With the definition of a bond and some energy
minimization you'd get close. If it's for displaying purposes only,
that might even be enough.
Hello.
I am new to PyMOL.
Very easily I succeeded to build a linear peptide, given its sequence.
I want to build a cyclic peptide for the same sequence, connecting the
C-terminus with the N-terminus. I know that the bond that is created
that way is too long - it should be, also, some
(auto
